Software

  • Dawg: the best simulator of neutral evolution in DNA sequences. Version 2 is in development, and it will harder, better, faster, stronger, and easier to use.

  • Ngila: pairwise sequences alignment with robust evolutionary models.

  • SPAGeDi: spatial analysis of genetic data. Developed by Olivier Hardy and Xavier Vekemans, and I have made major contributions to make the source code portable and packagible.

  • Red Lynx: A flexible population genetic simulator that runs in your browser. Great for teaching.

  • PICS-Ord: A method to extract phylogeny information from hard-to-align regions of multiple sequence alignments.

  • SoFoS: Site Frequency Spectrum Rescaler: A little javascript applet that can rescale site frequency spectra to a common sample size

  • Klineage: A forward simulator of ancestral lineages. Checkout from the subversion repository svn://scit.us/klineage/current.

  • MT-Dispatch: A FastCGI dispatcher for Movable Type blogging software. Full of features that make my life much easier.

  • Xomment: Ajaxify the comments on almost any MT blog

  • KwickXML: Robust formatting plugin for MT blogs. Includes advanced support for LaTeX equations. Checkout from the subversion repository svn://scit.us/misc/kwickxml/current/.

My Websites