|
|
|
@137
|
10 months |
reed |
more revision of unique sorting
|
|
|
|
@136
|
10 months |
reed |
sorting on hash working
|
|
|
|
@135
|
10 months |
reed |
return the ability to read sequences from stdin on '-'
|
|
|
|
@134
|
10 months |
reed |
more work on hash sorting
|
|
|
|
@133
|
10 months |
reed |
conversion of seq_db to boost::multi_index
|
|
|
|
@132
|
10 months |
reed |
sorting work
|
|
|
|
@131
|
10 months |
reed |
more sort work
|
|
|
|
@130
|
10 months |
reed |
start of seq_sort
|
|
|
|
@129
|
11 months |
reed |
support for releng scripts
|
|
|
|
@128
|
11 months |
reed |
saner order for --pairs=all
|
|
|
|
@127
|
11 months |
reed |
for zeta and geo models default to give a zero cost to identical sequences …
|
|
|
|
@126
|
12 months |
reed |
remove unneeded files
|
|
|
|
@125
|
12 months |
reed |
first stage of shifting ngila to cmake compilation
|
|
|
|
@124
|
20 months |
reed |
added cstring header, just in case
|
|
|
|
@123
|
3 years |
reed |
rolling 1.2.1 release
|
|
|
|
@122
|
3 years |
reed |
fixed sequence names not truncated bug
|
|
|
|
@121
|
3 years |
reed |
fixed bug when space is in fasta name
|
|
|
|
@120
|
3 years |
reed |
tag 1.2-release
|
|
|
|
@119
|
3 years |
reed |
configure bugfix
|
|
|
|
@118
|
3 years |
reed |
updated config.guess and config.sub
|
|
|
|
@117
|
3 years |
reed |
doc bug fix
|
|
|
|
@116
|
3 years |
reed |
more 1.2 prep
|
|
|
|
@115
|
3 years |
reed |
backporting 1.2 chanes to current
|
|
|
|
@114
|
3 years |
reed |
preparing 1.2
|
|
|
|
@113
|
3 years |
reed |
distcheck passed
|
|
|
|
@112
|
3 years |
reed |
CERRORR created
|
|
|
|
@111
|
3 years |
reed |
ngila man pages
|
|
|
|
@110
|
3 years |
reed |
ngila man pages
|
|
|
|
@109
|
3 years |
reed |
case insensitivity
|
|
|
|
@108
|
3 years |
reed |
pairs setting added
|
|
|
|
@107
|
3 years |
reed |
bug fix
|
|
|
|
@106
|
3 years |
reed |
bugfix
|
|
|
|
@105
|
3 years |
reed |
bugfix
|
|
|
|
@104
|
3 years |
reed |
fixed bug introduced in new code
|
|
|
|
@103
|
3 years |
reed |
bug fixes
|
|
|
|
@102
|
3 years |
reed |
bugfixes
|
|
|
|
@101
|
3 years |
reed |
bugfix
|
|
|
|
@100
|
3 years |
reed |
multi aln bugfix
|
|
|
|
@99
|
3 years |
reed |
xm.h header
porting changes
|
|
|
|
@98
|
3 years |
reed |
dc algorithm converted
|
|
|
|
@97
|
3 years |
reed |
remove gaps in sequence
|
|
|
|
@96
|
3 years |
reed |
all possible aligned pairs
|
|
|
|
@95
|
3 years |
reed |
offset function
|
|
|
|
@94
|
3 years |
reed |
added zeta_model geo_model
|
|
|
|
@93
|
3 years |
reed |
clustal alignment output
|
|
|
|
@92
|
3 years |
reed |
bug fix
|
|
|
|
@91
|
3 years |
reed |
bug fix
|
|
|
|
@90
|
3 years |
reed |
|
|
|
|
@89
|
3 years |
reed |
added version info again
|
|
|
|
@88
|
3 years |
reed |
ngila aligner class works
|
|
|
|
@87
|
3 years |
reed |
|
|
|
|
@86
|
3 years |
reed |
added model to ngila_app
|
|
|
|
@85
|
3 years |
reed |
added models.h and models.cpp
updated X-Macros
|
|
|
|
@84
|
3 years |
reed |
seqparser support for stdin
|
|
|
|
@83
|
3 years |
reed |
matparser support for '-'
|
|
|
|
@82
|
3 years |
reed |
new CERROR function
seqparser cleanup
|
|
|
|
@81
|
3 years |
reed |
matparser case insensitivity
|
|
|
|
@80
|
3 years |
reed |
added new spirit parsers
removed outdated files
|
|
|
|
@79
|
3 years |
reed |
|
|
|
|
@78
|
3 years |
reed |
mat parser and xmacros stuff
|
|
|
|
@77
|
3 years |
reed |
matrix parser
|
|
|
|
@76
|
3 years |
reed |
new parser work
|
|
|
|
@75
|
3 years |
reed |
more ngila stuff
|
|
|
|
@74
|
3 years |
reed |
updated some copyright notices
|
|
|
|
@73
|
3 years |
reed |
added xmacros
|
|
|
|
@72
|
3 years |
reed |
updated configure and makefile for transition to 1.2
|
|
|
|
@71
|
3 years |
reed |
updated configure and makefile for transition to 1.1
|
|
|
|
@70
|
3 years |
reed |
bugfix for windows binary
|
|
|
|
@69
|
4 years |
reed |
1.1 branding
|
|
|
|
@68
|
4 years |
reed |
1.1 tagging start
|
|
|
|
@67
|
4 years |
reed |
Removed ngilag
|
|
|
|
@66
|
4 years |
reed |
Fixed bug with holistic align
|
|
|
|
@65
|
4 years |
reed |
Fixed bug with reading clustal files
|
|
|
|
@64
|
4 years |
reed |
added end gap parameters
|
|
|
|
@63
|
4 years |
reed |
Branding 1.0
|
|
|
|
@62
|
4 years |
reed |
Created 1.0 Branch
|
|
|
|
@61
|
4 years |
reed |
preparing release 1.0
|
|
|
|
@60
|
4 years |
reed |
FreeEnds? now only works for the smaller sequence
Added O(MN) algorithm.
|
|
|
|
@59
|
4 years |
reed |
|
|
|
|
@58
|
5 years |
reed |
|
|
|
|
@57
|
5 years |
reed |
man page
|
|
|
|
@56
|
5 years |
reed |
|
|
|
|
@55
|
5 years |
reed |
nomsg
|
|
|
|
@54
|
5 years |
reed |
|
|
|
|
@53
|
5 years |
reed |
|
|
|
|
@52
|
5 years |
reed |
|
|
|
|
@51
|
5 years |
reed |
|
|
|
|
@50
|
5 years |
reed |
|
|
|
|
@49
|
5 years |
reed |
|
|
|
|
@48
|
5 years |
reed |
|
|
|
|
@47
|
5 years |
reed |
distcheck passed
|
|
|
|
@46
|
5 years |
reed |
|
|
|
|
@45
|
5 years |
reed |
|
|
|
|
@44
|
5 years |
reed |
|
|
|
|
@43
|
5 years |
reed |
added tests
|
|
|
|
@42
|
5 years |
reed |
added visual studio project
|
|
|
|
@41
|
5 years |
reed |
|
|
|
|
@40
|
5 years |
reed |
|
|
|
|
@39
|
5 years |
reed |
|
|
|
|
@38
|
5 years |
reed |
free ends
|
|
|
|