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Diff Rev Chgset Date Author Log Message
(edit) @153 [153] 5 months reed fixes for build releases on windows 7
(edit) @152 [152] 5 months reed fixes for building on windows 7
(edit) @151 [151] 5 months reed added several distance matrix output formats; removed identiy out in aln …
(edit) @150 [150] 5 months reed begin to support matrix output
(edit) @149 [149] 8 months reed make zeta the default model
(edit) @148 [148] 8 months reed this is the current branch
(edit) @147 [147] 8 months reed removed unused function
(edit) @146 [146] 8 months reed updating xm.h; typo
(edit) @145 [145] 8 months reed typo
(edit) @144 [144] 8 months reed calculate and report sequence identity measure
(edit) @143 [143] 8 months reed created ngila icon
(edit) @142 [142] 8 months reed reserve memory for temportary MN buffer
(edit) @141 [141] 8 months reed remove debugging info
(edit) @140 [140] 8 months reed bug fix for alignment of large sequence > 10kb
(edit) @139 [139] 8 months reed fasta format support; output file support; fixed printing of default …
(edit) @138 [138] 9 months reed all the logic associated with const_align appears to be working
(edit) @137 [137] 9 months reed more revision of unique sorting
(edit) @136 [136] 9 months reed sorting on hash working
(edit) @135 [135] 9 months reed return the ability to read sequences from stdin on '-'
(edit) @134 [134] 9 months reed more work on hash sorting
(edit) @133 [133] 9 months reed conversion of seq_db to boost::multi_index
(edit) @132 [132] 9 months reed sorting work
(edit) @131 [131] 9 months reed more sort work
(edit) @130 [130] 9 months reed start of seq_sort
(edit) @129 [129] 10 months reed support for releng scripts
(edit) @128 [128] 10 months reed saner order for --pairs=all
(edit) @127 [127] 10 months reed for zeta and geo models default to give a zero cost to identical sequences …
(edit) @126 [126] 10 months reed remove unneeded files
(edit) @125 [125] 10 months reed first stage of shifting ngila to cmake compilation
(edit) @124 [124] 18 months reed added cstring header, just in case
(edit) @123 [123] 3 years reed rolling 1.2.1 release
(edit) @122 [122] 3 years reed fixed sequence names not truncated bug
(edit) @121 [121] 3 years reed fixed bug when space is in fasta name
(edit) @120 [120] 3 years reed tag 1.2-release
(edit) @119 [119] 3 years reed configure bugfix
(edit) @118 [118] 3 years reed updated config.guess and config.sub
(edit) @117 [117] 3 years reed doc bug fix
(edit) @116 [116] 3 years reed more 1.2 prep
(edit) @115 [115] 3 years reed backporting 1.2 chanes to current
(edit) @114 [114] 3 years reed preparing 1.2
(edit) @113 [113] 3 years reed distcheck passed
(edit) @112 [112] 3 years reed CERRORR created
(edit) @111 [111] 3 years reed ngila man pages
(edit) @110 [110] 3 years reed ngila man pages
(edit) @109 [109] 3 years reed case insensitivity
(edit) @108 [108] 3 years reed pairs setting added
(edit) @107 [107] 3 years reed bug fix
(edit) @106 [106] 3 years reed bugfix
(edit) @105 [105] 3 years reed bugfix
(edit) @104 [104] 3 years reed fixed bug introduced in new code
(edit) @103 [103] 3 years reed bug fixes
(edit) @102 [102] 3 years reed bugfixes
(edit) @101 [101] 3 years reed bugfix
(edit) @100 [100] 3 years reed multi aln bugfix
(edit) @99 [99] 3 years reed xm.h header porting changes
(edit) @98 [98] 3 years reed dc algorithm converted
(edit) @97 [97] 3 years reed remove gaps in sequence
(edit) @96 [96] 3 years reed all possible aligned pairs
(edit) @95 [95] 3 years reed offset function
(edit) @94 [94] 3 years reed added zeta_model geo_model
(edit) @93 [93] 3 years reed clustal alignment output
(edit) @92 [92] 3 years reed bug fix
(edit) @91 [91] 3 years reed bug fix
(edit) @90 [90] 3 years reed
(edit) @89 [89] 3 years reed added version info again
(edit) @88 [88] 3 years reed ngila aligner class works
(edit) @87 [87] 3 years reed
(edit) @86 [86] 3 years reed added model to ngila_app
(edit) @85 [85] 3 years reed added models.h and models.cpp updated X-Macros
(edit) @84 [84] 3 years reed seqparser support for stdin
(edit) @83 [83] 3 years reed matparser support for '-'
(edit) @82 [82] 3 years reed new CERROR function seqparser cleanup
(edit) @81 [81] 3 years reed matparser case insensitivity
(edit) @80 [80] 3 years reed added new spirit parsers removed outdated files
(edit) @79 [79] 3 years reed
(edit) @78 [78] 3 years reed mat parser and xmacros stuff
(edit) @77 [77] 3 years reed matrix parser
(edit) @76 [76] 3 years reed new parser work
(edit) @75 [75] 3 years reed more ngila stuff
(edit) @74 [74] 3 years reed updated some copyright notices
(edit) @73 [73] 3 years reed added xmacros
(edit) @72 [72] 3 years reed updated configure and makefile for transition to 1.2
(edit) @71 [71] 3 years reed updated configure and makefile for transition to 1.1
(edit) @70 [70] 3 years reed bugfix for windows binary
(edit) @69 [69] 3 years reed 1.1 branding
(edit) @68 [68] 3 years reed 1.1 tagging start
(edit) @67 [67] 4 years reed Removed ngilag
(edit) @66 [66] 4 years reed Fixed bug with holistic align
(edit) @65 [65] 4 years reed Fixed bug with reading clustal files
(edit) @64 [64] 4 years reed added end gap parameters
(edit) @63 [63] 4 years reed Branding 1.0
(edit) @62 [62] 4 years reed Created 1.0 Branch
(edit) @61 [61] 4 years reed preparing release 1.0
(edit) @60 [60] 4 years reed FreeEnds? now only works for the smaller sequence Added O(MN) algorithm.
(edit) @59 [59] 4 years reed
(edit) @58 [58] 5 years reed
(edit) @57 [57] 5 years reed man page
(edit) @56 [56] 5 years reed
(edit) @55 [55] 5 years reed nomsg
(edit) @54 [54] 5 years reed
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