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Revision 207, 443 bytes
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| 1 | #example3.dawg |
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| 2 | |
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| 3 | Tree = ((A:0.1,B:0.1)C:0.1, (D:0.1)E:0.1); |
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| 4 | Length = 300 |
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| 5 | |
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| 6 | Model = "K2P" |
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| 7 | Params = {10,1} |
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| 8 | |
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| 9 | #use G+I model |
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| 10 | Gamma = 1 |
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| 11 | Iota = 0.1 |
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| 12 | |
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| 13 | # rate of insertion and deletion formation |
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| 14 | # 1 indel on average for every 10 substitutions |
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| 15 | # deletions more common than insertions |
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| 16 | Lambda = { 0.04, 0.06 } |
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| 17 | |
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| 18 | # Use the user defined gap model for each |
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| 19 | GapModel = {"NB", "NB"} |
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| 20 | |
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| 21 | GapParams = |
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| 22 | { |
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| 23 | {1, 0.5}, #insertion model |
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| 24 | {2, 0.5} #deletion model |
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| 25 | } |
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